Cover Page¶
Cover Page for Introduction to BLAST using Human Leptin
Submission Details¶
Submitter: | Douglas L. Chalker (dchalker@wustl.edu) |
Submission timestamp: | 2019/08/01 6:22:07 PM EST |
Authors: |
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Corresponding author: | Wilson Leung (wleung@wustl.edu) |
Lesson Overview¶
Lesson abstract: | Introduction to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity between them. This exercise used the example of the human leptin gene. It begins with recovering a desired sequence then demonstrates the use of BLAST to find related sequences. |
Lesson keywords: |
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Organism(s) that are the focus of this lesson: | Human |
Type(s) of student learning assessments: | Short answer |
Websites and online databases used: | NCBI BLAST (all BLAST and GenBank pages), Other NCBI sites |
Learning Topics¶
Topics in scientific fields: |
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Topics in mathematics or statistics: | Probability |
Topics in bioinformatics or data science: |
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Student Prerequisites¶
Recommended prior course work: | High school level biology |
Recommended computer skills: | Basic: Familiarity with web browsers, word processing |
Instructor Prerequisites¶
Recommended computer skills: | Basic: Familiarity with web browsers, word processing |
Instructional requirements: | Basic Computer Lab (Access to laptops/desktops, no large memory or CPU requirements) |
Implementation Recommendations¶
Instructional time required: | 1 class period or less |
Students work as individuals or teams? | Either individual or team work is possible |
Number of students in a class: | 10-25 students (assume no TAs and one computer for each student) |
Accessibility¶
Available languages: | English |
Additional materials for students with disabilities: | None |