+ 3600 0.0 0.0 0.0 D.mel_sequence1 929 1345 (2655) + TIRANT_LTR LTR/Gypsy 1 417 (0) 1
ANNOTATION EVIDENCE:
3600 0.00 0.00 0.00 D.mel_sequence1 929 1345 2655 + TIRANT_LTR LTR/Gypsy 1 417 0
3600 0.00 0.00 0.00 D.mel_sequence1 929 1345 (2655) TIRANT_LTR#LTR/Gypsy 1 417 (0) m_b1s001i0
D.mel_sequenc 929 AGTTACCACCCCACCCCCTAAACCCCCACGCCTCTAAACAAATCATCGGA 978
TIRANT_LTR#LT 1 AGTTACCACCCCACCCCCTAAACCCCCACGCCTCTAAACAAATCATCGGA 50
D.mel_sequenc 979 CACTCAACCGGGAAGACGGCAACTGGAACACCGCATCCGGCCGAATGCTG 1028
TIRANT_LTR#LT 51 CACTCAACCGGGAAGACGGCAACTGGAACACCGCATCCGGCCGAATGCTG 100
D.mel_sequenc 1029 ACATTCCGGCCGAATGCTGACATTACACAAAAGTCGCACTGCAACATTGT 1078
TIRANT_LTR#LT 101 ACATTCCGGCCGAATGCTGACATTACACAAAAGTCGCACTGCAACATTGT 150
D.mel_sequenc 1079 CCCCAGCTAGCCAGCCACATGCCGAGTCGGCATGTTCATTATGCTTACAA 1128
TIRANT_LTR#LT 151 CCCCAGCTAGCCAGCCACATGCCGAGTCGGCATGTTCATTATGCTTACAA 200
D.mel_sequenc 1129 TTAAGAACCTATGTACTTATGTATAAGACGAAAACGGAGGACTCGAGTAG 1178
TIRANT_LTR#LT 201 TTAAGAACCTATGTACTTATGTATAAGACGAAAACGGAGGACTCGAGTAG 250
D.mel_sequenc 1179 CCACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAAAGTCA 1228
TIRANT_LTR#LT 251 CCACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAAAGTCA 300
D.mel_sequenc 1229 GTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTT 1278
TIRANT_LTR#LT 301 GTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTT 350
D.mel_sequenc 1279 AAAAACCTTCATACATTTACACATCATATCTTCACAAAAGGCTCCACCCT 1328
TIRANT_LTR#LT 351 AAAAACCTTCATACATTTACACATCATATCTTCACAAAAGGCTCCACCCT 400
D.mel_sequenc 1329 CGATCACGGACTTAACT 1345
TIRANT_LTR#LT 401 CGATCACGGACTTAACT 417
Matrix = 20p39g.matrix
Kimura (with divCpGMod) = 0.00
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 416), avg. gap size = 0.0 (0 / 0)
+ 406 0.0 0.0 0.0 D.mel_sequence1 1346 1391 (2609) + TIRANT_I LTR/Gypsy 1 46 (7646) 1 *
ANNOTATION EVIDENCE:
406 0.00 0.00 0.00 D.mel_sequence1 1346 1391 2609 + TIRANT_I LTR/Gypsy 1 46 7646
406 0.00 0.00 0.00 D.mel_sequence1 1346 1391 (2609) TIRANT_I#LTR/Gypsy 1 46 (7646) m_b1s001i1
D.mel_sequenc 1346 GGCGCAGCCGGTAGGATGTCCTACCTATTAATAATTACCTACCTGT 1391
TIRANT_I#LTR/ 1 GGCGCAGCCGGTAGGATGTCCTACCTATTAATAATTACCTACCTGT 46
Matrix = 20p39g.matrix
Kimura (with divCpGMod) = 0.00
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 45), avg. gap size = 0.0 (0 / 0)
+12849 4.1 0.1 0.1 D.mel_sequence1 1366 2964 (1036) + TIRANT_I LTR/Gypsy 6094 7692 (0) 1
ANNOTATION EVIDENCE:
12849 4.14 0.13 0.13 D.mel_sequence1 1366 2964 1036 + TIRANT_I LTR/Gypsy 6094 7692 0
12849 4.14 0.13 0.13 D.mel_sequence1 1366 2964 (1036) TIRANT_I#LTR/Gypsy 6094 7692 (0) m_b1s001i2
D.mel_sequenc 1366 CTACCTATTAATAATTACC--TACCTGTTCACCCTTGTGCCAACTCAGGC 1413
v i-- -- v vv i
TIRANT_I#LTR/ 6094 CTACCTCTTAAC--TTACCATTTCAGGTTCACCCTTGCGCCAACTCAGGC 6141
D.mel_sequenc 1414 TATCCATGTCCATTATTTAAATGATAACGCCCCTATAGCCAAGATAGAAC 1463
?
TIRANT_I#LTR/ 6142 TATCCNTGTCCATTATTTAAATGATAACGCCCCTATAGCCAAGATAGAAC 6191
D.mel_sequenc 1464 TAGGGAAAGCCTTACTAATTGAGAGGTACAAAATAATTAGTCATGTAATC 1513
TIRANT_I#LTR/ 6192 TAGGGAAAGCCTTACTAATTGAGAGGTACAAAATAATTAGTCATGTAATC 6241
D.mel_sequenc 1514 AACCTACAAGACTACAGCAGATGTATGGAACAATTCCATCTGACCATTAA 1563
?
TIRANT_I#LTR/ 6242 AACCTACAAGACTACAGCAGATGTATGGAACAATTCCATCNGACCATTAA 6291
D.mel_sequenc 1564 TAAATTTAACCCCGATTCCACGTTGACGGACTCCGTCACAATTTTAAAAA 1613
? ? ?
TIRANT_I#LTR/ 6292 TAAATTTAACCCCGATNCCACNTTGACGGACTCCGTCACAATTTTAAAAN 6341
D.mel_sequenc 1614 CCAAATTAACCCAAGCCCAAGTAAAGCTCAAAGCCCTTACACCTTCATAT 1663
? ?
TIRANT_I#LTR/ 6342 CCAAATTAACCCAAGCCCAAGTAAAGCTCAAAGCCCTNACNCCTTCATAT 6391
D.mel_sequenc 1664 AGAAACAAACGGGGTTTGATTAACGGATTGGGGAGTCTAGTAAAGGTGGT 1713
? ?
TIRANT_I#LTR/ 6392 AGAAACAAACGGGGTTTGATTAACGGATTGGGNAGTCTNGTAAAGGTGGT 6441
D.mel_sequenc 1714 TACCGGCAACATGGATGCCAACGACAATAAAGAAATACATGAAGAACTTG 1763
? i i
TIRANT_I#LTR/ 6442 NACCGGCAACATGGATGCCAACGACGATAAAGAAATACATGAAGAACTCG 6491
D.mel_sequenc 1764 ACAATATAAAGAAAAATTCCGAAGTCAGTAACGACAATCTCCAAAAACAA 1813
i? ?
TIRANT_I#LTR/ 6492 ACAATATAAAGAAAAATTCCGAAGTCGNTAACGACAATCTCCAAAANCAA 6541
D.mel_sequenc 1814 GTAATGTTTAACAACGAAATACTTATCCGGTTCGAAAATATCACGGACCA 1863
? ?
TIRANT_I#LTR/ 6542 GNANTGTTTAACAACGAAATACTTATCCGGTTCGAAAATATCACGGACCA 6591
D.mel_sequenc 1864 TATAAATAATGAACAAATTTTGATAAGTAAATTCTTTGATACCTCACAAA 1913
?
TIRANT_I#LTR/ 6592 TATAAATAATGAACAAATTTTGATAAGTAAATTCTTTGANACCTCACAAA 6641
D.mel_sequenc 1914 ACAAAATATACAAACACTTAAACTTACAAGATACCCTTCTGGAAGAAATA 1963
v
TIRANT_I#LTR/ 6642 ACAAAATTTACAAACACTTAAACTTACAAGATACCCTTCTGGAAGAAATA 6691
D.mel_sequenc 1964 CAATATTTAAATAGGATTAATTATAACATAGAATTATTCATTAACCACCT 2013
i
TIRANT_I#LTR/ 6692 CAATATTTAAATAGGATTAATTATAACATAGAATTATTCATTAACCACTT 6741
D.mel_sequenc 2014 AAACGACATAACAGAAAGTATGCTATTGGCGAAAATAAATATAATTCCCA 2063
i
TIRANT_I#LTR/ 6742 AAACGACATAACGGAAAGTATGCTATTGGCGAAAATAAATATAATTCCCA 6791
D.mel_sequenc 2064 AGTTCATCCTAAATGAACAAGAAATGGATAAAATAAAAACAATACTGGAA 2113
?
TIRANT_I#LTR/ 6792 AGTTCATCCTAAATGAACAAGAAATGGATAAAATAAAAANAATACTGGAA 6841
D.mel_sequenc 2114 AAACAAAATATCACAGTCAAAAATGAACAAAGTATATACAATTTCCTACA 2163
i ? v
TIRANT_I#LTR/ 6842 AAACAAAATATCACGGTNAAAAATGAACAAAGTATATACAATTTCCTAAA 6891
D.mel_sequenc 2164 AATGAATACACTAAATTACGAACAAAAGATTATTTTTAATATCAAAGTCC 2213
i i i ?
TIRANT_I#LTR/ 6892 AATGAACACGCTAAGTTACGAACAAAAGATNATTTTTAATATCAAAGTCC 6941
D.mel_sequenc 2214 CAATTTTTAAACAACCTTTTCATACCCTCGCCAGACTAGTTCCATTACCA 2263
TIRANT_I#LTR/ 6942 CAATTTTTAAACAACCTTTTCATACCCTCGCCAGACTAGTTCCATTACCA 6991
D.mel_sequenc 2264 ATAAATAACACATATTTTGTAATAACCCCAAATTACCTAGCTTATAATAT 2313
i
TIRANT_I#LTR/ 6992 ATAAATAACACATATTTTGTAATAACCCCAAATTACTTAGCTTATAATAT 7041
D.mel_sequenc 2314 TAATAATAAGAAATTTCATATGACCCGTAAATGCCCCAAACTGGATAATA 2363
? i
TIRANT_I#LTR/ 7042 TAATAATAAGAAATTTCATATGACCCGNAAATGCCCCAAACTGGATAACA 7091
D.mel_sequenc 2364 CATTCTTGTGCGACGAGAACTTCTACGTTGATACACCACAGAACAACACA 2413
i i
TIRANT_I#LTR/ 7092 CATTCTTGTGCGACGAGAACTTCTACGTCGACACACCACAGAACAACACA 7141
D.mel_sequenc 2414 TGCCTGGAACACCTTTTGAACGGAGAAAACAGTTCCTGCGATGTACGGGA 2463
i
TIRANT_I#LTR/ 7142 TGCCTGGAACACCTTTTGAACGGAGAAAACAGTTCCTGCGATGTGCGGGA 7191
D.mel_sequenc 2464 AACCGGCCCCATCACCGACGTGTTCGAGGCAGAGAGAGGTTACATCTTCG 2513
i i
TIRANT_I#LTR/ 7192 AACCGGCCCCGTCACCGACGTGTTCGAGGCGGAGAGAGGTTACATCTTCG 7241
D.mel_sequenc 2514 CATTCAACGTGAACAAACTGAAGGTATCCCTAACAAACGGCTCCGAGCTC 2563
i i ?
TIRANT_I#LTR/ 7242 CGTTCAACGCGAACAANCTGAAGGTATCCCTAACAAACGGCTCCGAGCTC 7291
D.mel_sequenc 2564 TCAATAATGGGGTCAGCCATCATCAGATACATTAACGAAACAATACAGAT 2613
? i
TIRANT_I#LTR/ 7292 TCAATAANGGGGTCAGCCATCATCAGATACATTAACGAAACAATACGGAT 7341
D.mel_sequenc 2614 TAACGGTATCGATTACGACGGCACGGTTGACACGTTCCCTGAACAGACGG 2663
i ?
TIRANT_I#LTR/ 7342 TAACGGTATCGATTACGACGGCACGGTTGACACGTTCCCCGAACAGNCGG 7391
D.mel_sequenc 2664 ATTTTGATCTTCCCCCCATGCGAAAAGTAACTAGGAATACCACTATTACG 2713
?
TIRANT_I#LTR/ 7392 ATTTTGATCTTCCCCCCNTGCGAAAAGTAACTAGGAATACCACTATTACG 7441
D.mel_sequenc 2714 GTACTAAGCCTAGAAAAACTGCACCTCGAAGCCACCCAAACAATGGATAA 2763
? i i
TIRANT_I#LTR/ 7442 GTACTAAGCCTAGAAAAACTNCACCTCGAAGCCGCCCAAACAACGGATAA 7491
D.mel_sequenc 2764 AATCCTGGCCGTCCATCACAATACTATACAGCACACCTGGACACTCTACA 2813
? ? i i
TIRANT_I#LTR/ 7492 AATCCTGGCCGTCCATCACANTACNACACGGCACACCTGGACACTCTACA 7541
D.mel_sequenc 2814 CTCTGCTCGGATTGGTAACGTTCCTAGCAGTCATCTTATGGCTGCACCGA 2863
i i ?
TIRANT_I#LTR/ 7542 CTCTGCTCGGATTGGTAGCGTCCCTAGCAGTNATCTTATGGCTGCACCGA 7591
D.mel_sequenc 2864 CGAACGAAACACATCGTCCACATCCACGAGGATCATCACGTACCAATCTA 2913
i i ?
TIRANT_I#LTR/ 7592 CGAACGAAACACATCGTCCACGTCCACGAGGATCACCACNTACCAATCTA 7641
D.mel_sequenc 2914 CGCGTCATCCATACCTTCGCTATGGCCGTCACTTCGAACTGGGGGGGGAG 2963
i i
TIRANT_I#LTR/ 7642 CGCGCCATCCATACCTTCGCTATGGCCGTCGCTTCGAACTGGGGGGGGAG 7691
D.mel_sequenc 2964 G 2964
TIRANT_I#LTR/ 7692 G 7692
Matrix = 20p39g.matrix
Kimura (with divCpGMod) = 1.35
Transitions / transversions = 5.33 (32/6)
Gap_init rate = 0.00 (3 / 1598), avg. gap size = 1.33 (4 / 3)
+ 3600 0.0 0.0 0.0 D.mel_sequence1 2965 3381 (619) + TIRANT_LTR LTR/Gypsy 1 417 (0) 1
ANNOTATION EVIDENCE:
3600 0.00 0.00 0.00 D.mel_sequence1 2965 3381 619 + TIRANT_LTR LTR/Gypsy 1 417 0
3600 0.00 0.00 0.00 D.mel_sequence1 2965 3381 (619) TIRANT_LTR#LTR/Gypsy 1 417 (0) m_b1s001i3
D.mel_sequenc 2965 AGTTACCACCCCACCCCCTAAACCCCCACGCCTCTAAACAAATCATCGGA 3014
TIRANT_LTR#LT 1 AGTTACCACCCCACCCCCTAAACCCCCACGCCTCTAAACAAATCATCGGA 50
D.mel_sequenc 3015 CACTCAACCGGGAAGACGGCAACTGGAACACCGCATCCGGCCGAATGCTG 3064
TIRANT_LTR#LT 51 CACTCAACCGGGAAGACGGCAACTGGAACACCGCATCCGGCCGAATGCTG 100
D.mel_sequenc 3065 ACATTCCGGCCGAATGCTGACATTACACAAAAGTCGCACTGCAACATTGT 3114
TIRANT_LTR#LT 101 ACATTCCGGCCGAATGCTGACATTACACAAAAGTCGCACTGCAACATTGT 150
D.mel_sequenc 3115 CCCCAGCTAGCCAGCCACATGCCGAGTCGGCATGTTCATTATGCTTACAA 3164
TIRANT_LTR#LT 151 CCCCAGCTAGCCAGCCACATGCCGAGTCGGCATGTTCATTATGCTTACAA 200
D.mel_sequenc 3165 TTAAGAACCTATGTACTTATGTATAAGACGAAAACGGAGGACTCGAGTAG 3214
TIRANT_LTR#LT 201 TTAAGAACCTATGTACTTATGTATAAGACGAAAACGGAGGACTCGAGTAG 250
D.mel_sequenc 3215 CCACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAAAGTCA 3264
TIRANT_LTR#LT 251 CCACTCTCTGACAATAAACTTCATACTGATTTTGAACTTCAAGAAAGTCA 300
D.mel_sequenc 3265 GTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTT 3314
TIRANT_LTR#LT 301 GTCGTATTCTTTATTGGAAATCTTCACACTACAACTATCTGCTGAAACTT 350
D.mel_sequenc 3315 AAAAACCTTCATACATTTACACATCATATCTTCACAAAAGGCTCCACCCT 3364
TIRANT_LTR#LT 351 AAAAACCTTCATACATTTACACATCATATCTTCACAAAAGGCTCCACCCT 400
D.mel_sequenc 3365 CGATCACGGACTTAACT 3381
TIRANT_LTR#LT 401 CGATCACGGACTTAACT 417
Matrix = 20p39g.matrix
Kimura (with divCpGMod) = 0.00
Transitions / transversions = 1.00 (0/0)
Gap_init rate = 0.00 (0 / 416), avg. gap size = 0.0 (0 / 0)