RepeatMasker started 23-Dec-2023 16:39:06 PST

RepeatMasker version open-4.0.9
Search Engine: NCBI/RMBLAST [ 2.14.1+ ]
Master RepeatMasker Database: /u3/local/rmserver/share/Libraries/RepeatMaskerLib.embl ( Complete Database: CONS-Dfam_3.0 )



analyzing file /usr/local/rmserver/tmp/RM2_dmel_seq1.fasta_1703378345

Checking for E. coli insertion elements
identifying matches to drosophila fruit fly genus sequences in batch 1 of 1
processing output: 
cycle 1 
cycle 2 
cycle 3 
cycle 4 
cycle 5 
cycle 6 
cycle 7 
cycle 8 
cycle 9 
cycle 10 
Generating output... 
masking
done
5.26user 1.27system 0:07.29elapsed 89%CPU (0avgtext+0avgdata 798136maxresident)k
50876inputs+520outputs (38major+741391minor)pagefaults 0swaps


Summary:

==================================================
file name: RM2_dmel_seq1.fasta_1703378345
sequences:             1
total length:       4000 bp  (4000 bp excl N/X-runs)  
GC level:         40.27 %
bases masked:       2453 bp ( 61.32 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
Retroelements            1         2453 bp   61.33 %
   SINEs:                0            0 bp    0.00 %
   Penelope              0            0 bp    0.00 %
   LINEs:                0            0 bp    0.00 %
    CRE/SLACS            0            0 bp    0.00 %
     L2/CR1/Rex          0            0 bp    0.00 %
     R1/LOA/Jockey       0            0 bp    0.00 %
     R2/R4/NeSL          0            0 bp    0.00 %
     RTE/Bov-B           0            0 bp    0.00 %
     L1/CIN4             0            0 bp    0.00 %
   LTR elements:         1         2453 bp   61.33 %
     BEL/Pao             0            0 bp    0.00 %
     Ty1/Copia           0            0 bp    0.00 %
     Gypsy/DIRS1         1         2453 bp   61.33 %
       Retroviral        0            0 bp    0.00 %

DNA transposons          0            0 bp    0.00 %
   hobo-Activator        0            0 bp    0.00 %
   Tc1-IS630-Pogo        0            0 bp    0.00 %
   En-Spm                0            0 bp    0.00 %
   MuDR-IS905            0            0 bp    0.00 %
   PiggyBac              0            0 bp    0.00 %
   Tourist/Harbinger     0            0 bp    0.00 %
   Other (Mirage,        0            0 bp    0.00 %
    P-element, Transib)

Rolling-circles          0            0 bp    0.00 %

Unclassified:            0            0 bp    0.00 %

Total interspersed repeats:        2453 bp   61.33 %


Small RNA:               0            0 bp    0.00 %

Satellites:              0            0 bp    0.00 %
Simple repeats:          0            0 bp    0.00 %
Low complexity:          0            0 bp    0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element
                                                      

The query species was assumed to be drosophila fruit fly genus
RepeatMasker Combined Database: Dfam_3.0
                                         
run with rmblastn version 2.14.1+

Results

Right-click and select "Save As" to save results to your computer or click on the link to view the file in the browser.
Annotation File: RM2_dmel_seq1.fasta_1703378345.out.html ( NEW XHTML Format )
RM2_dmel_seq1.fasta_1703378345.out.txt ( Text File Format )
Masked File: RM2_dmel_seq1.fasta_1703378345.masked
Alignment File: RM2_dmel_seq1.fasta_1703378345.align