RepeatMasker version open-4.0.9 Search Engine: NCBI/RMBLAST [ 2.14.1+ ] Master RepeatMasker Database: /u3/local/rmserver/share/Libraries/RepeatMaskerLib.embl ( Complete Database: CONS-Dfam_3.0 ) analyzing file /usr/local/rmserver/tmp/RM2_dmel_seq1.fasta_1703378345 Checking for E. coli insertion elements identifying matches to drosophila fruit fly genus sequences in batch 1 of 1 processing output: cycle 1 cycle 2 cycle 3 cycle 4 cycle 5 cycle 6 cycle 7 cycle 8 cycle 9 cycle 10 Generating output... masking done 5.26user 1.27system 0:07.29elapsed 89%CPU (0avgtext+0avgdata 798136maxresident)k 50876inputs+520outputs (38major+741391minor)pagefaults 0swaps
================================================== file name: RM2_dmel_seq1.fasta_1703378345 sequences: 1 total length: 4000 bp (4000 bp excl N/X-runs) GC level: 40.27 % bases masked: 2453 bp ( 61.32 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------- Retroelements 1 2453 bp 61.33 % SINEs: 0 0 bp 0.00 % Penelope 0 0 bp 0.00 % LINEs: 0 0 bp 0.00 % CRE/SLACS 0 0 bp 0.00 % L2/CR1/Rex 0 0 bp 0.00 % R1/LOA/Jockey 0 0 bp 0.00 % R2/R4/NeSL 0 0 bp 0.00 % RTE/Bov-B 0 0 bp 0.00 % L1/CIN4 0 0 bp 0.00 % LTR elements: 1 2453 bp 61.33 % BEL/Pao 0 0 bp 0.00 % Ty1/Copia 0 0 bp 0.00 % Gypsy/DIRS1 1 2453 bp 61.33 % Retroviral 0 0 bp 0.00 % DNA transposons 0 0 bp 0.00 % hobo-Activator 0 0 bp 0.00 % Tc1-IS630-Pogo 0 0 bp 0.00 % En-Spm 0 0 bp 0.00 % MuDR-IS905 0 0 bp 0.00 % PiggyBac 0 0 bp 0.00 % Tourist/Harbinger 0 0 bp 0.00 % Other (Mirage, 0 0 bp 0.00 % P-element, Transib) Rolling-circles 0 0 bp 0.00 % Unclassified: 0 0 bp 0.00 % Total interspersed repeats: 2453 bp 61.33 % Small RNA: 0 0 bp 0.00 % Satellites: 0 0 bp 0.00 % Simple repeats: 0 0 bp 0.00 % Low complexity: 0 0 bp 0.00 % ================================================== * most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be drosophila fruit fly genus RepeatMasker Combined Database: Dfam_3.0 run with rmblastn version 2.14.1+
Annotation File: | RM2_dmel_seq1.fasta_1703378345.out.html ( NEW XHTML Format ) |
RM2_dmel_seq1.fasta_1703378345.out.txt ( Text File Format ) | |
Masked File: | RM2_dmel_seq1.fasta_1703378345.masked |
Alignment File: | RM2_dmel_seq1.fasta_1703378345.align |