GENSCAN 1.0	Date run: 11-Nov-105	Time: 10:30:27

Sequence Unknown : 170934 bp : 43.30% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:


Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -   1029   1024    6                               1.05
 1.01 Sngl -   9160   8738  423  1  0   79   49   394 0.877  30.90
 1.00 Prom -  14680  14641   40                              -3.46

 2.00 Prom +  35754  35793   40                              -5.26
 2.01 Sngl +  50467  50901  435  0  0   55   42   448 0.399  33.17
 2.02 PlyA +  53128  53133    6                               1.05

 3.00 Prom +  55104  55143   40                              -9.26
 3.01 Init +  56584  56644   61  0  1   67   92   -35 0.145  -3.60
 3.02 Term +  72008  72360  353  0  2   49   46   478 0.852  34.35
 3.03 PlyA +  73098  73103    6                               1.05

 4.00 Prom +  78208  78247   40                              -2.96
 4.01 Init + 112457 112613  157  1  1   53   34   165 0.901   5.67
 4.02 Term + 112685 112950  266  0  2   77   40   149 0.843   4.67
 4.03 PlyA + 114211 114216    6                               1.05

 5.04 PlyA - 114334 114329    6                               1.05
 5.03 Term - 119129 118774  356  0  2   70   54   525 0.982  41.96
 5.02 Intr - 120003 119595  409  0  1   11   82   198 0.380   5.34
 5.01 Init - 121497 121246  252  0  0   46   81   116 0.468   3.83
 5.00 Prom - 123905 123866   40                              -7.06

 6.04 PlyA - 124122 124117    6                               1.05
 6.03 Term - 125834 125095  740  0  2  101   42   650 0.996  55.33
 6.02 Intr - 128460 128314  147  1  0  119   54   104 0.578  10.31
 6.01 Init - 131271 131187   85  0  1   91   57   120 0.600   8.33
 6.00 Prom - 131563 131524   40                              -7.76

 7.10 PlyA - 131684 131679    6                              -1.95
 7.09 Term - 133089 132284  806  1  2  148   44   936 0.999  88.59
 7.08 Intr - 134624 134486  139  2  1   82  103   142 0.930  15.14
 7.07 Intr - 135131 134944  188  0  2  103    9   127 0.087   5.71
 7.06 Intr - 144109 144060   50  0  2  109   78    -8 0.051  -1.38
 7.05 Intr - 147074 146991   84  1  0  108   87    67 0.083   7.54
 7.04 Intr - 148901 148861   41  2  2   82   92    48 0.088   1.62
 7.03 Intr - 153997 153840  158  2  2   19   53   263 0.976  15.63
 7.02 Intr - 154613 154544   70  2  1  -11  104   155 0.689   5.95
 7.01 Init - 157828 157820    9  1  0   84   57    34 0.558  -1.28
 7.00 Prom - 160198 160159   40                              -5.36

 8.05 PlyA - 160224 160219    6                               1.05
 8.04 Term - 166490 166240  251  0  2   66   48   265 0.977  16.17
 8.03 Intr - 168226 167450  777  2  0   43   58   679 0.473  51.85
 8.02 Intr - 169524 168911  614  2  2   26   76   140 0.076  -1.37
 8.01 Intr - 170307 170052  256  1  1  100  -18   571 0.295  44.20

Predicted peptide sequence(s):

Predicted coding sequence(s):


>Unknown|GENSCAN_predicted_peptide_1|140_aa
MSAYAFYVQTCREEHRKKNPEVPVNFAEFSKKYSERWKTMSGKDKSKFDEITKADKMRYD
QEMKDYGPAKGAKKKKDPNASKRPLSGFFLFCSELGPKIKSTNPTISIRDMAKKLGEMWN
NLNGSEKQPYITKAAKLKEK

>Unknown|GENSCAN_predicted_CDS_1|423_bp
atgtctgcttatgccttctatgtgcagacgtgcagagaagaacataggaagaaaaaccca
gaggtccctgtcaattttgcagaattttccaagaagtactctgagaggtggaagacaatg
tctgggaaagataaatctaaatttgatgaaataacaaaggcagataaaatgcgctatgat
caggaaatgaaggattatggaccagctaagggagccaagaagaagaaggatcctaatgcc
tccaaaaggccactgtctggattcttcctgttctgttcagaattaggccccaagatcaaa
tctacaaaccccaccatctctattagagacatggcaaaaaagctgggtgagatgtggaat
aacttaaatggcagtgaaaagcagccctacatcactaaggcggcaaagctgaaggagaag
tag

>Unknown|GENSCAN_predicted_peptide_2|144_aa
MELQEIQLKEAKHIAEEADRKYEEVPRKLVIIEGDLECTEERAELAESRCQETDEQIRLM
DQNLKCLSDAEEKYSQKEDIYEEEIKILTDKLKEAETRAEFTERLVAKLEKTTDDLEYKL
KCNKEENLCTQRMLYQTLLDLNEM

>Unknown|GENSCAN_predicted_CDS_2|435_bp
atggaactccaggaaatccaactcaaagaagctaagcatattgcagaagaggcagatagg
aaatatgaagaggtgcctcgtaagttggtgatcattgaaggagacttggaatgcacagag
gaacgagctgagctggcagagtcccgctgccaagagacagatgagcagatcagactgatg
gaccagaacctgaagtgtctaagtgatgctgaagaaaaatactctcaaaaagaagacata
tatgaggaagagatcaagattctcactgacaaactcaaggaggcagagacccgtgctgag
tttactgagagattggtagccaagctggaaaagacaactgatgacttggaatataaactg
aaatgcaacaaagaggagaacctctgtacacaaaggatgctgtaccagactctgcttgac
ctgaatgagatgtag

>Unknown|GENSCAN_predicted_peptide_3|137_aa
MGQPHSTKCILSHLLQLVVTGFRGCCDDQNKGRFDGPEAQEEACSGKRTYQELLVNQNPI
VQPLASRRLTRNLYKCIKKAMKQKQLRRGVKEVQKFVNRGEKGIMVLAEDTLPIEVYCHL
PVMCEDRNLAYVSIPLR

>Unknown|GENSCAN_predicted_CDS_3|414_bp
atgggtcagccccattctaccaaatgtattctttcccatttgctccagctggtggtaaca
ggtttccgcggctgctgcgatgaccaaaataaaggtagattcgatgggcccgaggctcag
gaggaggcgtgctccgggaagcgcacctaccaagagctgctggttaaccagaaccccatc
gtgcagcccctggcttctcgccgcctcacgcggaacctctacaaatgcatcaagaaagcc
atgaagcagaagcagcttcggcgtggggtgaaagaggttcagaaatttgtcaacagagga
gaaaaagggatcatggttttggcagaagacacactgcccattgaggtatactgccatctt
ccagtcatgtgtgaggaccgaaatctggcctatgtctctatccctctaagatga

>Unknown|GENSCAN_predicted_peptide_4|140_aa
MLLLSRPGPAQVHPEARSLQAREEPGCCSLRALPGAQEAGETERRRWVKNSEGSRRSCGI
SSRSCRSLAGRGQALVPPARSPQPQQSRSSRGRRCPSDSIARADLFPSLGQLTPAHPKGK
TPSVPQNGKIPVHTLPEPCC

>Unknown|GENSCAN_predicted_CDS_4|423_bp
atgctgctcctttcccgccccggaccggcgcaggtccatccagaggcgcgaagcctgcag
gccagggaagagcccggatgctgctcccttcgtgctctgcctggggcccaggaagcagga
gaaacggaacggcggcgttgggtcaagaactcagaggggtcgcgaaggtcctgcggcatc
tcctctcgcagttgccgcagcctagccggccgggggcaggcgctggtgccccccgcccgc
tccccgcagccccagcagagccggagttcccgcggccgccgctgcccgagcgactcgatc
gcccgagccgacctcttcccaagccttggacagctgacccctgcgcatcctaaaggaaag
accccatctgttcctcagaatgggaaaattcccgtgcatactttgccagaaccgtgttgc
tga

>Unknown|GENSCAN_predicted_peptide_5|338_aa
MLELWTGPVRPTRERGGSWVSGRRQMACSARPGPHAGHVRQRHLSLPRLLPLKIRRSSSS
ASRRAPGAKLSGKEKGAESDERGKTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEA
DVSGGYPQCAPAVYSGNLSSSMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYN
NSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFT
TKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISP
ATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH

>Unknown|GENSCAN_predicted_CDS_5|1017_bp
atgttggagctgtggaccggccctgtgaggcccacgcgggagcgcggaggctcctgggtc
tcggggcgccggcagatggcctgcagcgcacggcccggcccccacgctggccacgtccgc
cagcgtcatctctctctcccccgcctcctacccctaaaaatccggcggtcgagtagctcc
gcatcccggagggctcccggtgcaaaactgagtgggaaagagaaaggggcggagagcgac
gagagagggaagacttccgggaacctgggggtgtcctactcccactcgagttgtggtcca
agctatggctcacagaacttcagtgcgccttacagcccctacgcgttaaatcaggaagca
gacgtaagtggtgggtacccccagtgcgctcccgctgtttactctggaaatctctcatct
tccatggtccagcatcaccaccaccaccagggttatgctgggggcgcggtgggctcgcct
caatacattcaccactcatatggacaggagcaccagagcctggccctggctacgtataat
aactccttgtcccctctccacgccagccaccaagaagcctgtcgctcccctgcatcggag
acatcttctccagcgcagacttttgactggatgaaagtcaaaagaaaccctcccaaaaca
gggaaagttggagagtacggctacctgggtcaacccaacgcggtgcgcaccaacttcact
accaagcagctcacggaactggagaaggagttccacttcaacaagtacctgacgcgcgcc
cgcagggtggagatcgctgcatccctgcagctcaacgagacccaagtgaagatctggttc
cagaaccgccgaatgaagcaaaagaaacgtgagaaggagggtctcttgcccatctctccg
gccaccccgccaggaaacgacgagaaggccgaggaatcctcagagaagtccagctcttcg
ccctgcgttccttccccggggtcttctacctcagacactctgactacctcccactga

>Unknown|GENSCAN_predicted_peptide_6|323_aa
MGPGQAIRLEARRILRMAAGAPGGCGSSVLFPTTEPGSKHPRCPRIRKVWEAVQAAREHS
LYLNQPAPNQSDKDKKKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRR
VEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLF
EQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPT
VPNCLSTMGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVD
ISADSLDFFTDTLTTIDLQHLNY

>Unknown|GENSCAN_predicted_CDS_6|972_bp
atggggcctggccaggctattcgcctggaagctcggcgaattctcaggatggcggctggg
gctccaggcggctgcggcagctctgtgctgtttcccacaacagaacccggaagcaaacat
ccccggtgcccaaggatcaggaaggtgtgggaggcagttcaggctgccagggagcactcg
ctgtatctaaaccaaccagcccccaaccagagcgacaaggacaagaagaaggaatccctg
gaaatcgccgatggcagcggcgggggatcgcggcgcctgagaactgcttacaccaacaca
cagcttctagagctggaaaaagaatttcatttcaacaagtacctttgcagaccccgaagg
gtggagattgcagcgctgctggatttgactgagagacaagtgaaagtgtggtttcagaac
cggaggatgaagcacaagaggcagacccagtgcaaggaaaaccaaaacagcgaagggaaa
tgtaaaagccttgaggactccgagaaagtagaggaggacgaggaagagaagacgctcttt
gagcaagcccttagcgtctctggggcccttctggagagagaaggctacacttttcagcaa
aatgccctctctcagcagcaggctcccaatggacacaatggcgactcccaaagtttccca
gtctcgcctttaaccagcaatgagaaaaatctgaaacattttcagcaccagtcacccact
gttcccaactgcttgtcaacaatgggccagaactgtggagctggcctaaacaatgacagt
cctgaggcccttgaggtcccctctttgcaggactttagcgttttctccacagattcctgc
ctgcagctttcagatgcagtttcacccagtttgccaggttccctcgacagtcccgtagat
atttcagctgacagcttagacttttttacagacacactcaccacaatcgacttgcagcat
ctgaattactaa

>Unknown|GENSCAN_predicted_peptide_7|514_aa
MLLSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRY
LTRRRRIEIAHTLCLSERQGFCESRERAASGETAPGHRKRRFPERLELETIPGSEFKHLS
RGGVKGRNHAQPPAAAISLRGAAIGGGVSRDRGGVPMCALTGVKPLSECAIKIVKQRDAK
SDLLRQLGDLRWLPLPGSQRNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQK
TSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLN
LTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPY
EPQSPPPFSKPPQGTYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHAL
QGNGSYGTPHIQGSPVFVGGSYVEPMSNSGPALFGLTHLPHAASGAMDYGGAGPLGSGHH
HGPGPGEPHPTYTDLTGHHPSQGRIQEAPKLTHL

>Unknown|GENSCAN_predicted_CDS_7|1545_bp
atgctgctgagcccgctgggcctgaagggcaaggagcccgtggtgtacccctggatgaag
aagatccatgtcagcgccgttaaccccagttataacggaggggagcctaagcgctctcga
accgcctacacccggcagcaggtcttggagctggagaaggagttccacttcaatcgctac
ctgacccggcggcgccgcatcgagatcgcccacacgctctgtttgtctgagcgccagggt
ttctgcgagtccagggagcgcgccgcgtccggggaaacagcgcctggacaccggaaaagg
cgattccctgagcgcctggagttggagacaattcctggttcagaatttaaacatctttct
aggggaggagtgaaggggaggaatcatgcacagcctcctgcagctgctataagtctgcgc
ggggcggccattggcggcggagtgtcacgtgaccgcgggggcgtgccaatgtgcgccctc
acgggtgtcaaacccctgtcagagtgtgcgatcaagatcgtgaaacaacgcgatgcaaaa
agcgacctactacgacagctcggcgatctacggtggctacccctaccaggcagccaacgg
aatgccagcaacaaccctacccctgccaacgcggccaagagccccctgctcaactcaccc
acagtggccaaacaaatcttcccctggatgaaagagtctcgacaaaacacaaagcagaaa
accagcagctccagctcaggcgaaagctgcgctggcgacaagagcccgccggggcaggct
tcgtccaagcgcgcgcgcacggcctacacgagcgcgcagctggtggagctggagaaagag
ttccacttcaaccgctacctgtgccggccgcgccgggtggagatggccaatctgctgaac
ctcactgagcgccagatcaagatctggttccagaatcgccgcatgaagtacaaaaaggat
cagaagggcaagggcatgctaacgtcatcggggggccagtctccaagtcgcagccccgtg
ccccccggagccggtggctatctgaactctatgcattcgctggtcaacagcgtcccgtat
gagccccagtcgcccccgcccttctccaagcccccccagggtacctacgggctgcccccc
gcctcctaccctgcgtccctgcccagctgcgcacccccgccacccccacagaagcgctac
acggcggcaggggcgggcgcagggggcacccccgactatgacccgcacgctcatgccctg
cagggcaacggcagctatgggaccccacacatacagggaagccccgtcttcgtggggggc
agctatgtggagcccatgagcaactccgggccagccctctttggtctaactcacctcccc
cacgctgcctcgggcgccatggactatgggggtgccgggccgctgggcagcggccaccac
cacgggccggggcctggggagccgcaccccacctacacggaccttaccggccaccatcct
tctcagggaagaattcaggaagcacccaagctcacccacctgtga

>Unknown|GENSCAN_predicted_peptide_8|632_aa
XAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQIKIWFQNRR
MKWKKENKLINSTQPSGEDSEAKAGEKEARGTKGAPTEPSLSVPRVQPSVEEKQPQPRRV
NLGAGGTLQPGEPLGSLRLPAPDSRSQPPIAPASPPQQRSGPNEGPRAMGAARVLASRRA
RGACNAGPPAGRLHLPLSYVCDLLESFGAVENNYRDTRHCQGMLPLSPSFYSWRSKQDPS
NPPHGSPDPKQPLWLQGAWAHSLGSRRTLRLGARLARGTGPCDEDFPGWILHEFTSRGHQ
AGFTTGQQKHVIRSRTPYLGAYVGGNQVHVPVISIIHHKLCKGAIDAQTTASHKSSTHIK
KQMSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGR
SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPPPDPLPCSAVAPSPGSDSHHGG
KNSLSNSSGASANAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYP
WMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ
IKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP

>Unknown|GENSCAN_predicted_CDS_8|1899_bp
ngtgctgtgtatgggagccatgggcgccgaggccgccagacctacacgcgctaccagaca
ctggagctggagaaggagttccacttcaaccgctacctgacacggcgccgccgcatcgag
atcgccaacgcgctctgcctcaccgagcgccagatcaagatctggttccagaaccgccgc
atgaagtggaaaaaggaaaacaagctcatcaattccacgcagcccagcggggaggactca
gaggcaaaagcgggcgagaaggaagctcgaggaacaaagggggccccaacagagcccagt
ctctcggtcccgcgtgtgcaaccgtcagtggaagagaagcagcctcagccgaggcgagtt
aacctgggcgcgggtggaacattacagcccggggagcccctgggctccctcaggctcccg
gctccggattcccgctcccagcctccgatagcgcccgcgtcgccgccacagcagcgttca
ggacccaacgaggggcccagggccatgggagccgccagagtcctggcttccagacgtgcc
aggggcgcctgcaacgccgggcctccagcggggagactccacttgcctctcagctatgtt
tgtgatttacttgagtctttcggagccgtggaaaataactacagagatactaggcattgc
caaggaatgcttccattatcgccctcattttactcctggaggtctaagcaagaccccagt
aacccgccccacggatccccagaccccaagcagcctctgtggctgcagggagcctgggcc
cactcgctgggttcaaggagaaccctccgacttggggcccggctggctcgaggaaccgga
ccctgtgatgaagattttccaggctggatactgcacgagtttacctctagaggtcatcag
gcaggatttacgactggacaacaaaagcacgtgattcgaagtcgtaccccatatttgggt
gcctacgtaggagggaaccaagtacatgtcccagtcatttccataattcatcataaattg
tgcaagggtgctatagacgcacaaacgaccgcgagccacaaatcaagcacacatatcaaa
aaacaaatgagctcttattttgtaaactcattttgcggtcgctatccaaatggcccggac
taccagttgcataattatggagatcatagttccgtgagcgagcaattcagggactcggcg
agcatgcactccggcaggtacggctacggctacaatggcatggatctcagcgtcggccgc
tcgggctccggccactttggctccggagagcgcgcccgcagctacgctgccagcgccagc
gcggcgcccgccgagcccaggtacagccagccggccacgtccacgcactctcctccgccc
gatccgctgccctgctccgccgtggccccctcgcccggcagcgacagccaccacggcggg
aaaaactccctgagcaactccagcggcgcctcggccaacgccggcagcacccacatcagc
agcagagagggggttggcacggcgtccggagccgaggaggacgcccctgccagcagcgag
caggcgagtgcgcagagcgagccgagcccggcgccgcccgcccaaccccagatctacccc
tggatgcgcaagctgcacataagtcatgacaacataggcggcccggaaggcaaaagggcc
cggacggcctacacgcgctaccagaccctggagctggagaaggagttccacttcaaccgt
tacctgacccgcagaaggaggattgaaatagcacatgctctttgcctctccgagagacaa
attaaaatctggttccaaaaccggagaatgaagtggaaaaaagataataagctgaaaagc
atgagcatggccgcggcaggaggggccttccgtccctga


Explanation

Gn.Ex : gene number, exon number (for reference)
Type  : Init = Initial exon (ATG to 5' splice site)
        Intr = Internal exon (3' splice site to 5' splice site)
        Term = Terminal exon (3' splice site to stop codon)
        Sngl = Single-exon gene (ATG to stop)
        Prom = Promoter (TATA box / initation site)
        PlyA = poly-A signal (consensus: AATAAA)
S     : DNA strand (+ = input strand; - = opposite strand)
Begin : beginning of exon or signal (numbered on input strand)
End   : end point of exon or signal (numbered on input strand)
Len   : length of exon or signal (bp)
Fr    : reading frame (a forward strand codon ending at x has frame x mod 3)
Ph    : net phase of exon (exon length modulo 3)
I/Ac  : initiation signal or 3' splice site score (tenth bit units)
Do/T  : 5' splice site or termination signal score (tenth bit units)
CodRg : coding region score (tenth bit units)
P     : probability of exon (sum over all parses containing exon)
Tscr  : exon score (depends on length, I/Ac, Do/T and CodRg scores)

Comments

The SCORE of a predicted feature (e.g., exon or splice site) is a
log-odds measure of the quality of the feature based on local sequence
properties. For example, a predicted 5' splice site with
score > 100 is strong; 50-100 is moderate; 0-50 is weak; and
below 0 is poor (more than likely not a real donor site).

The PROBABILITY of a predicted exon is the estimated probability under
GENSCAN's model of genomic sequence structure that the exon is correct.
This probability depends in general on global as well as local sequence
properties, e.g., it depends on how well the exon fits with neighboring
exons.  It has been shown that predicted exons with higher probabilities
are more likely to be correct than those with lower probabilities.