Annotation of UTRs?

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cjones
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Joined: Sun Feb 04, 2007 10:19 pm
Location: Moravian College, Bethlehem PA
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Annotation of UTRs?

Post by cjones » Mon Apr 06, 2015 10:34 pm

Am I right to presume that annotation of D. elegans and D. biarmipes is again coding-sequence only? If there's time at the end of the semester we'll go on to try to annotate TSSs, which will require some UTR mapping, so I wonder if we should annotate the UTRs as well right now.
Chris Jones
Assoc. Prof. of Biology
Moravian College
Bethlehem PA

wleung
Posts: 185
Joined: Sun Feb 04, 2007 7:41 pm
Location: Washington University in St. Louis

Re: Annotation of UTRs?

Post by wleung » Mon Apr 06, 2015 11:22 pm

The TSS annotations are optional for both the D. elegans and D. biarmipes projects. The current TSS annotation protocol recommends that your students should try to annotate the initial transcribed exon before trying to annotate the TSS. However, your students do not need to annotate all of the untranslated exons (UTRs) for a given gene.

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