modENCODE RNA-Seq data
Posted: Mon Jul 06, 2015 3:16 pm
Question from Dr. Jamie Sanford, Ohio Northern University
I am doing some basic gene expression analysis on my gene of interest. Specifically, we are trying to determine which of the gene's isoforms are expressed in fly ovary. Is there a way to easily use the modENCODE data to find out isoform specific expression of a gene in a given tissue? I know on GBrowse you can see the developmental subsets expression data, but those are not tissue specific. I know there is a modMine, but I'm not sure I know how to use to ask what I want - which is simply "what isoforms did modENCODE detect in the ovary via the tissue specific RNAseq?"