M_BB0112A10
after extracting the files then trying to open consed from within edit_dir we get the following error message
RT tag line should be:
<readname> <tag type> <tag source> <padded read pos start> <padded read pos end> <date YYMMDD:HH24MISS>
where the padded read pos's are from the left end and tag type must be recognized by consed but tag type is not recognized
ace file = M_BB0112A10.fasta.screen.ace.Bio4342
Version 15.0 (050831)
Linux@linux-raji:~/Desktop/M_BB0112A10/edit_dir> /usr/local/genome/bin/consed_linux2.6
no ~/.consedrc file so no user resources will be used--that's ok
couldn't open readOrder.txt--that's ok
Could not open consed.fileOfTagTypes: /usr/local/genome/lib/tagTypes.txt errno=2 No such file or directory
0% done. 50 reads read so far...
1% done. 100 reads read so far...
1% done. 150 reads read so far...
2% done. 200 reads read so far...
2% done. 250 reads read so far...
3% done. 300 reads read so far...
3% done. 350 reads read so far...
4% done. 400 reads read so far...
5% done. 450 reads read so far...
5% done. 500 reads read so far...
6% done. 550 reads read so far...
6% done. 600 reads read so far...
7% done. 650 reads read so far...
7% done. 700 reads read so far...
8% done. 750 reads read so far...
8% done. 800 reads read so far...
9% done. 850 reads read so far...
exception thrown: ace file error detected from source file parseAceFile.cpp at 1066
Error in file M_BB0112A10.fasta.screen.ace.Bio4342 at line 39990. Line:
ofl68h09.b1 nogrow tag_consed 1 784 031008:151609
RT tag line should be:
<readname> <tag type> <tag source> <padded read pos start> <padded read pos end> <date YYMMDD:HH24MISS>
where the padded read pos's are from the left end and tag type must be recognized by consed but tag type is not recognized
ace file: M_BB0112A10.fasta.screen.ace.Bio4342
Version 15.0 (050831)
ace file error detected from source file parseAceFile.cpp at 1066
Error in file M_BB0112A10.fasta.screen.ace.Bio4342 at line 39990. Line:
ofl68h09.b1 nogrow tag_consed 1 784 031008:151609
RT tag line should be:
<readname> <tag type> <tag source> <padded read pos start> <padded read pos end> <date YYMMDD:HH24MISS>
where the padded read pos's are from the left end and tag type must be recognized by consed but tag type is not recognized
ace file = M_BB0112A10.fasta.screen.ace.Bio4342
Version 15.0 (050831)
suggestions?
