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are single strand/chemistry regions "gaps"?

Posted: Fri Apr 24, 2009 4:01 pm
by cjones
I have a project with four regions of single strand/chemistry which stubbornly refuse to be finished. When I submit this project, I'm guessing I should check the "Projects need [sic] more data to cover gaps" option, as the project isn't "completely finished." Or do I go with "Not finished"? In some sense these regions are gaps, but not in the physical sense I think the checklist means.

Or do I call this project "completely finished" as all the bases, even within these single strand/chemistry regions, meets phred's quality criteria?