Annotation Questions

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Gene not in Gene Record Finder

Last post by carrigo « Sun Dec 03, 2017 6:27 pm
Replies: 1
by dpaetkau » Thu Nov 16, 2017 4:15 pm

1 Replies

2020 Views

Last post by carrigo
Sun Dec 03, 2017 6:27 pm
Altered Exon Structure and Missing Exon

Last post by wleung « Sat Sep 23, 2017 2:45 am
Replies: 2
by speters » Tue Sep 12, 2017 7:09 pm

2 Replies

2202 Views

Last post by wleung
Sat Sep 23, 2017 2:45 am
stop codon read-through

Last post by wleung « Tue Nov 29, 2016 9:10 pm
Replies: 1
by jkennell » Wed Nov 23, 2016 4:34 pm

1 Replies

1810 Views

Last post by wleung
Tue Nov 29, 2016 9:10 pm
Annotation of UTRs?

Last post by wleung « Mon Apr 06, 2015 11:22 pm
Replies: 1
by cjones » Mon Apr 06, 2015 10:34 pm

1 Replies

4252 Views

Last post by wleung
Mon Apr 06, 2015 11:22 pm
Not all of the gene in the contig?

Last post by wleung « Wed Mar 25, 2015 4:37 pm
Replies: 1
by mshaw » Wed Mar 25, 2015 3:36 pm

1 Replies

2337 Views

Last post by wleung
Wed Mar 25, 2015 4:37 pm
unconventional start codons

Last post by dbarnard « Thu Mar 05, 2015 4:37 pm
Replies: 2
by dbarnard » Thu Mar 05, 2015 3:13 pm

2 Replies

3084 Views

Last post by dbarnard
Thu Mar 05, 2015 4:37 pm
Premature Stop codons

Last post by wleung « Fri Dec 12, 2014 3:33 am
Replies: 1
by dpaetkau » Thu Dec 11, 2014 7:45 pm

1 Replies

2576 Views

Last post by wleung
Fri Dec 12, 2014 3:33 am
Discrepancies for some isoforms

Last post by jkennell « Fri Oct 24, 2014 4:35 pm
Replies: 2
by jkennell » Tue Oct 21, 2014 4:35 pm

2 Replies

2601 Views

Last post by jkennell
Fri Oct 24, 2014 4:35 pm
Half of exons in another contig/should be reported?

Last post by wleung « Fri Jun 13, 2014 6:06 am
Replies: 1
by abarral » Thu Jun 12, 2014 11:42 pm

1 Replies

2041 Views

Last post by wleung
Fri Jun 13, 2014 6:06 am
Sequencing error?

Last post by drevie « Fri May 02, 2014 9:43 pm
Replies: 10
by drevie » Thu May 01, 2014 11:00 pm

10 Replies

5271 Views

Last post by drevie
Fri May 02, 2014 9:43 pm
Number of exons

Last post by drevie « Wed Apr 30, 2014 3:13 pm
Replies: 2
by drevie » Tue Apr 29, 2014 10:35 pm

2 Replies

2750 Views

Last post by drevie
Wed Apr 30, 2014 3:13 pm
Annotate gene?

Last post by wleung « Thu Apr 24, 2014 10:47 pm
Replies: 1
by drevie » Thu Apr 24, 2014 8:46 pm

1 Replies

2228 Views

Last post by wleung
Thu Apr 24, 2014 10:47 pm
New genes

Last post by wleung « Thu Apr 24, 2014 4:46 pm
Replies: 4
by drevie » Wed Apr 23, 2014 1:56 am

4 Replies

3374 Views

Last post by wleung
Thu Apr 24, 2014 4:46 pm
Exon location

Last post by drevie « Sat Apr 12, 2014 12:58 pm
Replies: 4
by drevie » Wed Apr 09, 2014 6:56 pm

4 Replies

3269 Views

Last post by drevie
Sat Apr 12, 2014 12:58 pm
Frame disagreement between browser and Blastx alignments

Last post by nkokan « Thu Apr 10, 2014 6:07 am
Replies: 4
by nkokan » Wed Apr 09, 2014 10:57 pm

4 Replies

3311 Views

Last post by nkokan
Thu Apr 10, 2014 6:07 am
Very short first exon

Last post by wleung « Thu Apr 10, 2014 12:23 am
Replies: 1
by drevie » Wed Apr 09, 2014 6:51 pm

1 Replies

3020 Views

Last post by wleung
Thu Apr 10, 2014 12:23 am
different frame between BLAST results and genome browser

Last post by jleatherman « Wed Sep 25, 2013 4:46 pm
Replies: 2
by jleatherman » Tue Sep 24, 2013 5:03 pm

2 Replies

2978 Views

Last post by jleatherman
Wed Sep 25, 2013 4:46 pm
claimed same project twice...

Last post by pgupta « Mon May 13, 2013 10:58 pm
Replies: 2
by pgupta » Mon May 13, 2013 8:46 pm

2 Replies

2901 Views

Last post by pgupta
Mon May 13, 2013 10:58 pm
Submitting Annotation report for a gene desert fosmid

Last post by wleung « Thu May 02, 2013 7:59 pm
Replies: 1
by dpaetkau » Thu May 02, 2013 7:08 pm

1 Replies

2070 Views

Last post by wleung
Thu May 02, 2013 7:59 pm
aanotation query for gene missing both 3' and 5' end

Last post by wleung « Thu May 02, 2013 3:49 pm
Replies: 1
by pgupta » Thu May 02, 2013 3:40 pm

1 Replies

2210 Views

Last post by wleung
Thu May 02, 2013 3:49 pm
How to report a new gene

Last post by wleung « Wed Apr 24, 2013 10:34 pm
Replies: 1
by ksaville » Wed Apr 24, 2013 6:58 pm

1 Replies

2191 Views

Last post by wleung
Wed Apr 24, 2013 10:34 pm
BLASTp search for final submission item

Last post by wleung « Tue Apr 23, 2013 2:02 am
Replies: 1
by cjones » Tue Apr 23, 2013 1:33 am

1 Replies

2195 Views

Last post by wleung
Tue Apr 23, 2013 2:02 am
scaffold map for biarmipies annotation?

Last post by wleung « Tue Apr 23, 2013 1:49 am
Replies: 1
by cjones » Tue Apr 23, 2013 12:14 am

1 Replies

2112 Views

Last post by wleung
Tue Apr 23, 2013 1:49 am
Gene aligned using BlastX not present on desired chromosome?

Last post by wleung « Thu Apr 18, 2013 10:10 pm
Replies: 1
by pgupta » Thu Apr 18, 2013 8:54 pm

1 Replies

2079 Views

Last post by wleung
Thu Apr 18, 2013 10:10 pm
gene missing from Gene Record Finder

Last post by cjones « Thu Apr 18, 2013 1:28 am
Replies: 2
by cjones » Wed Apr 17, 2013 11:56 pm

2 Replies

2584 Views

Last post by cjones
Thu Apr 18, 2013 1:28 am
how to report a microRNA?

Last post by wleung « Thu Apr 18, 2013 1:14 am
Replies: 1
by cjones » Thu Apr 18, 2013 12:33 am

1 Replies

2038 Views

Last post by wleung
Thu Apr 18, 2013 1:14 am
query regarding annotation word doc

Last post by cshaffer « Mon Apr 15, 2013 6:22 pm
Replies: 1
by pgupta » Mon Apr 15, 2013 5:04 pm

1 Replies

3352 Views

Last post by cshaffer
Mon Apr 15, 2013 6:22 pm
Query regarding PROJECT SUBMISSION..

Last post by wleung « Thu Apr 11, 2013 8:05 pm
Replies: 1
by pgupta » Thu Apr 11, 2013 7:06 pm

1 Replies

2585 Views

Last post by wleung
Thu Apr 11, 2013 8:05 pm
dot plot adjustability?

Last post by wleung « Tue Apr 09, 2013 2:34 am
Replies: 1
by cjones » Tue Apr 09, 2013 1:09 am

1 Replies

2229 Views

Last post by wleung
Tue Apr 09, 2013 2:34 am
query regarding annotation submission report

Last post by wleung « Thu Apr 04, 2013 7:14 pm
Replies: 1
by pgupta » Thu Apr 04, 2013 3:59 pm

1 Replies

2129 Views

Last post by wleung
Thu Apr 04, 2013 7:14 pm
D biarmipes contig 31 exon 14

Last post by wleung « Wed Apr 03, 2013 5:45 am
Replies: 1
by cmackinnon » Wed Apr 03, 2013 2:47 am

1 Replies

2103 Views

Last post by wleung
Wed Apr 03, 2013 5:45 am
Spurious blastX result

Last post by wleung « Tue Mar 26, 2013 5:20 am
Replies: 1
by cjones » Tue Mar 26, 2013 4:24 am

1 Replies

2232 Views

Last post by wleung
Tue Mar 26, 2013 5:20 am
Same gene present on two different fosmids

Last post by wleung « Thu Mar 21, 2013 10:42 pm
Replies: 1
by pgupta » Thu Mar 21, 2013 8:04 pm

1 Replies

2087 Views

Last post by wleung
Thu Mar 21, 2013 10:42 pm
Anananasee annotation -missing , extra exons

Last post by pszauter « Fri Mar 01, 2013 7:34 pm
Replies: 3
by ksaville » Wed Feb 27, 2013 9:52 pm

3 Replies

3077 Views

Last post by pszauter
Fri Mar 01, 2013 7:34 pm
Problem in annotating D.ananassae fosmid

Last post by pgupta « Tue Feb 26, 2013 12:57 am
Replies: 4
by pgupta » Thu Feb 14, 2013 8:57 pm

4 Replies

3069 Views

Last post by pgupta
Tue Feb 26, 2013 12:57 am
Annotation report form - isoform naming

Last post by wleung « Mon Feb 25, 2013 11:28 pm
Replies: 1
by ksaville » Mon Feb 25, 2013 8:48 pm

1 Replies

2067 Views

Last post by wleung
Mon Feb 25, 2013 11:28 pm
Which projects to claim?

Last post by ksaville « Tue Feb 12, 2013 6:55 pm
Replies: 2
by ksaville » Tue Feb 12, 2013 5:30 pm

2 Replies

2582 Views

Last post by ksaville
Tue Feb 12, 2013 6:55 pm
Query regarding D ananassae projects

Last post by cshaffer « Mon Jan 21, 2013 6:31 pm
Replies: 1
by pgupta » Mon Jan 21, 2013 6:48 am

1 Replies

2517 Views

Last post by cshaffer
Mon Jan 21, 2013 6:31 pm
How do you know that....

Last post by wleung « Thu Jan 10, 2013 11:00 pm
Replies: 1
by cbazinet » Wed Jan 09, 2013 10:57 pm

1 Replies

2280 Views

Last post by wleung
Thu Jan 10, 2013 11:00 pm
Mutation or sequencing error?

Last post by wleung « Fri Nov 09, 2012 4:12 pm
Replies: 1
by chowell » Fri Nov 09, 2012 6:03 am

1 Replies

2572 Views

Last post by wleung
Fri Nov 09, 2012 4:12 pm
Gene Model Check Dot Plot Analysis

Last post by akleinschmit « Thu Nov 01, 2012 5:34 pm
Replies: 2
by akleinschmit » Thu Nov 01, 2012 3:18 am

2 Replies

2781 Views

Last post by akleinschmit
Thu Nov 01, 2012 5:34 pm
Finding Elusive Exons in D. biarmipes

Last post by akleinschmit « Thu Nov 01, 2012 5:32 pm
Replies: 3
by akleinschmit » Thu Nov 01, 2012 2:47 am

3 Replies

2995 Views

Last post by akleinschmit
Thu Nov 01, 2012 5:32 pm
Gene model checker, in frame stop codons

Last post by wleung « Mon Oct 15, 2012 2:41 pm
Replies: 1
by etucker » Sun Oct 14, 2012 11:44 pm

1 Replies

3532 Views

Last post by wleung
Mon Oct 15, 2012 2:41 pm
D. biarmides question

Last post by cmackinnon « Mon Sep 24, 2012 5:58 pm
Replies: 4
by cmackinnon » Wed Sep 19, 2012 3:48 pm

4 Replies

3146 Views

Last post by cmackinnon
Mon Sep 24, 2012 5:58 pm
D. erecta 2nd 3L extended fosmid 32 changes

Last post by cmackinnon « Thu Sep 13, 2012 2:23 am
Replies: 2
by cmackinnon » Wed Sep 12, 2012 10:09 pm

2 Replies

2422 Views

Last post by cmackinnon
Thu Sep 13, 2012 2:23 am
last codon codes just for a stop codon

Last post by wleung « Thu Aug 30, 2012 8:15 pm
Replies: 1
by pgupta » Thu Aug 30, 2012 7:31 pm

1 Replies

2065 Views

Last post by wleung
Thu Aug 30, 2012 8:15 pm
Help with first exon of CG10565 in Fosmid 18 of D. erecta

Last post by bdanner « Fri May 11, 2012 8:28 pm
Replies: 2
by bdanner » Wed May 09, 2012 8:33 pm

2 Replies

2567 Views

Last post by bdanner
Fri May 11, 2012 8:28 pm
overlapping exons

Last post by wleung « Mon Apr 30, 2012 2:25 pm
Replies: 1
by mspratt » Mon Apr 30, 2012 11:50 am

1 Replies

2318 Views

Last post by wleung
Mon Apr 30, 2012 2:25 pm
Gene model checker

Last post by wleung « Tue Apr 24, 2012 2:36 pm
Replies: 1
by drevie » Tue Apr 24, 2012 2:06 pm

1 Replies

2400 Views

Last post by wleung
Tue Apr 24, 2012 2:36 pm
D. erecta mRNA

Last post by drevie « Thu Apr 12, 2012 6:07 pm
Replies: 2
by drevie » Wed Apr 11, 2012 7:15 pm

2 Replies

3166 Views

Last post by drevie
Thu Apr 12, 2012 6:07 pm

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