Search found 185 matches

by wleung
Tue Feb 19, 2008 8:41 pm
Forum: Alumni Workshop
Topic: Genome Consortium for Active Teaching Publication
Replies: 0
Views: 12609

Genome Consortium for Active Teaching Publication

Here is the link to the GCAT Paper on Science magazine from Dr. Alvarez.
by wleung
Tue Feb 12, 2008 10:19 pm
Forum: Annotation Questions
Topic: Annotation- Gene Model Checker
Replies: 1
Views: 5838

Annotation- Gene Model Checker

Q1. If possible, please sent me the list of projects you wish to be put back into the pool of available projects. Q2. When preparing files for submission, the name of the project must match the name of the fosmid as it appear on the UCSC Genome Browser mirror on the goose server. The error with the ...
by wleung
Wed Feb 06, 2008 5:04 pm
Forum: Sequence Improvement Questions
Topic: crossmatch error
Replies: 18
Views: 35539

Other options to run phred/phrap/consed

There are two options that we are currently developing to make installing phred/phrap/consed easier: running linux as a LiveCD and as a virtual machine under Parallels (on the Mac) or VMware on the PC. I have created test versions using these two approaches but they are not yet suitable for use in a...
by wleung
Tue Feb 05, 2008 5:18 pm
Forum: Sequence Improvement Questions
Topic: Claiming revised projects
Replies: 4
Views: 12087

Claiming revised projects

The packages for the project claim system has been updated to link to the revised packages. Therefore, if you have not yet claimed a project, you can use claim system to claim the revised projects as before. --- The additional pages I have created is designed to address two issues: 1. Projects that ...
by wleung
Fri Feb 23, 2007 12:16 am
Forum: Sequence Improvement Questions
Topic: problem running autofinish
Replies: 1
Views: 5883

Running autofinish

Before you can use autofinish on your projects, you will need to confirm that consed is properly installed and that autofinish is configured to suggest the types experiments you want. You can configure autofinish by creating a .consedrc file inside the edit_dir of your project directory. Please see ...