Search found 4 matches

by akleinschmit
Thu Nov 01, 2012 5:34 pm
Forum: Annotation Questions
Topic: Gene Model Check Dot Plot Analysis
Replies: 2
Views: 4738

Re: Gene Model Check Dot Plot Analysis

Sounds good. Thank you for your insight Wilson :)
by akleinschmit
Thu Nov 01, 2012 5:32 pm
Forum: Annotation Questions
Topic: Finding Elusive Exons in D. biarmipes
Replies: 3
Views: 4982

Re: Finding Elusive Exons in D. biarmipes

Thank you Wilson :) That explanation was wonderful (I hadn't considered using the information held within the Dmel ortholog coordinates to help us locate the exons)!
by akleinschmit
Thu Nov 01, 2012 3:18 am
Forum: Annotation Questions
Topic: Gene Model Check Dot Plot Analysis
Replies: 2
Views: 4738

Gene Model Check Dot Plot Analysis

My students and I were wondering if the labeled line (red arrow) in the dot plot below can be attributed to a simple short duplication (circled in the alignment below)? We performed a BLASTx search of the sequences involved to look for a potential duplication candidate with out much luck and spotted...
by akleinschmit
Thu Nov 01, 2012 2:47 am
Forum: Annotation Questions
Topic: Finding Elusive Exons in D. biarmipes
Replies: 3
Views: 4982

Finding Elusive Exons in D. biarmipes

My students and I are having a hard time finding the following D. melanogaster ortholog exons in D. biarmipes as outlined in the excel screen shots below (D.bia_DOT_Contig10). We have attempted to look for predicted splice sites, RNA-seq data, conservation with other Drosophila species, as well as u...