Search found 2 matches

by cbazinet
Sun Jan 26, 2014 9:49 pm
Forum: Sequence Improvement Questions
Topic: Hybrid Assemblies: criteria for HQDs in MNRs
Replies: 4
Views: 6592

Re: Hybrid Assemblies

As we move into the hybrid assemblies, some aspects of the tutorials (e.g., comparing actual restriction digest patterns with those predicted by an in silico assembly) become less relevant/irrelevant. I am having my students go through these various tutorials before they start on a project--and noti...
by cbazinet
Wed Jan 09, 2013 10:57 pm
Forum: Annotation Questions
Topic: How do you know that....
Replies: 1
Views: 3641

How do you know that....

In annotation, there are occasionally small exons predicted by multiple gene prediction programs, with an RNAseq signal, but no significant BLAST hits to other Drosophila. What do you make of these? e.g., if biarmipes is expressing a small genes that is unique to it, that's what we would expect, and...